Wishlist Science

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Package Wishlists: Base - Development - Drivers - Education - Emulation - Eyecandy - Games - GNOME - KDE - Mobile Computing - Multimedia - Network - Productivity - Science - Various - Dropped Packages


Index: Numbers A B C D E F G H I J K L M O P Q R S T U V W X Y Z

A

Package Description License wanted by remark
ARPACK Arnoldi package library BSD-like Scientists Similar LAPACK, but using the Arnoldi technique to solve eigenproblems. Exists also in a parallel version (PARPACK)
Asymptote Vector Graphics Drawing Program GPL Scientists Asymptote is a powerful descriptive vector graphics language that provides a natural coordinate-based framework for technical drawing.
ATLAS Automatically Tuned Linear Algebra Software BSD-like Scientists Contains optimized BLAS and some LAPACK routines. Atlas however has to be compiled on the computer where it is used, because of the self-tunig during the build process. So, really nice would be an application that builds ATLAS, puts the library into a rpm, and installs it.

Feel free to download a version from home:brcha repository. Keep in mind that only x86_64 version is correct. The i586 version is optimized for the openSUSE's build farm which has SSE3 enabled computers so it probably will not work on most computers. The best way (until I fix that issue and after that too) is to download the src.rpm and rebuild it yourself (rpmbuild --recompile libatlas3-3.8.0-3.1.src.rpm) since then it will be optimized for your own CPU.

B

Package Description License wanted by remark
Bibus-biblio Bibus bibliographic software GPL Science Writers Bibus is a bibliographic database.It can directly insert references in OpenOffice.org and MS Word and generate the bibliographic index.
BOINC BOINCLGPLUsers who want to participate in projects like seti@homeThe Berkeley Open Infrastructure for Network Computing (BOINC) is a non-commercial middleware system for volunteer computing, originally developed to support the SETI@home project, but intended to be useful for other applications in areas as diverse as mathematics, medicine, molecular biology, climatology, and astrophysics.(From Wikipedia article)

C

Package Description License wanted by remark
CFITSIO FITS File Subroutine Library  ? Free Open Source (BSD-Like) Astronomist CFITSIO is a library of C and Fortran subroutines for reading and writing data files in FITS (Flexible Image Transport System) data format.

E

Package Description License wanted by remark
EMBOSSThe European Molecular Biology Open Software SuiteGPLScientists Widely used in the Scientific Community.
Engauge DigitizerDigitalize plots to obtain x-y filesGPLScientists Alternative is g3data
ESO-MIDASAstronomical image processing and data analysis system.GPLScientists/AstronomersThe ESO-MIDAS system provides general tools for image processing and data reduction with emphasis on astronomical applications including imaging and special reduction packages for ESO instrumentation at La Silla and the VLT at Paranal. In addition it contains applications packages for stellar and surface photometry, image sharpening and decomposition, statistics and various others. ESO-MIDAS is available under the GNU General Public License (GPL), and can be implemented on VMS, OpenVMS and UNIX (Linux) systems.

http://software.opensuse.org/download/science/

ExtremaVisualization and data analysis tool GPLScientists / Engineers Extrema is a powerful visualization and data analysis tool that enables researchers to quickly distill their large, complex data sets into meaningful information. Its flexibility, sophistication, and power allow you to easily develop your own commands and create highly customized graphs.

F

Package Description License wanted by remark
fitykfityk is a program for nonlinear fitting of analytical functions GPLScientists/Engineers

Please try out the package at http://build.opensuse.org/project/show?project=home%3Ajdpipe

FramewaveFramewave is a set of optimized libraries for vector,signal and image processing by AMD ApacheScientists/Engineers Similiar to Intel Performance Primitives
FreeMat FreeMat is an environment for engineering and scientific prototyping and data processing. GPL Mathematicians/Scientists/Engineers Similar to Mathworks MATLAB.

G

Package Description License wanted by remark
g3data Digitalize plots to obtain x-y filesGPLScientistsSee also Engauge Digitizer
GAP Groups, Algorithms, Programming GPL Mathematicians, Students GAP is a free system for computational discrete mathematics, in particular group theory.
GChemPaint 2D chemical drawing program GPL Scientists chemical drawing program.
GDL GNU Data Language GPL Scientists/Engineers Visual data-analysis software widely used is research. It fully supports netCDF files. It provides a python module and has an interface to python
gEDA Suite of Electronic Design Automation tools GPLElectronics
Engineers (undergraduates and working)
The gEDA project is working on producing a full GPL'd suite of Electronic Design Automation (EDA) tools. These tools are used for electrical circuit design, schematic capture, simulation, prototyping, and production.

Packages available at http://software.opensuse.org/download/science/

GMT Generic Mapping Tools Very powerful system to do geo referenced and other graphical plots GPL Many scientists, lots of other users needing script generated graphics

Packages available at http://software.opensuse.org/download/Application:/Geo/

GRASS GIS version 6.x Geographic Information System GPL Scientists
Public authorities
Geospatial data management and analysis, image processing, graphics/maps production, spatial modeling, and visualization.

Packages available at http://software.opensuse.org/download/Application:/Geo/

gretl Gnu Regression, Econometrics and Time-series Library GPL Students
Economists
It is an open-source software application for compiling and interpreting data for econometrics. Though powerful, it's also simple to use while doing regression or time-series analysis. Uses gnuplot for drawing.
gvSIGTool oriented to manage geographic informationGPLScientists
Engineers
gvSIG is characterized by a user-friendly interface, with a quick access to the most usual raster and vector formats. In the same view it includes local as well as remote data through a WMS or WFS source.
GRAMPSGRAMPS (Genealogical Research and Analysis Management Programming System) GPLScientists
users
GRAMPS helps you track your family tree. It allows you to store, edit, and research genealogical data. (Note: Packages are available at http://download.opensuse.org/repositories/home:/rbos/openSUSE_10.2/ (in the noarch folder), kindly contributed by Richard Bos. They work fine, SFAICS.)

H

Package Description License wanted by remark
HEALPix Hierarchical Equal Area isoLatitude Pixelization of a sphere GPL Cosmologists C/C++/Fortran library and tools for Cosmic Microwave Background experiments data analysis.

I

Package Description License wanted by remark
IT++ Communications Engineering package GPL IT++ is a C++ library of mathematical, signal processing, speech processing, and communications classes and functions.

Package available at http://software.opensuse.org/download/science/

J

Package Description License wanted by remark
JabRef Java GUI for BibTeX databases GPL Scientists JabRef is a graphical frontend to manage BibTeX databases, the standard LaTeX bibliography reference format. JabRef is build to be platform independant (requires Java 1.4.2 or newer).
JGR Java GUI for R GPL Scientists JGR (speak 'Jaguar') is a universal and unified Graphical User Interface for R (it actually abbreviates Java Gui for R).


K

Package Description License wanted by remark
Kicad Circuit Design GPL Scientists Kicad is an open source (GPL) software for the creation of electronic schematic diagrams and printed circuit board artwork.

Packages available at http://software.opensuse.org/download/science/

Kradview The free DICOM viewer for Linux GPL Education, Scientists Kradview is a GPLed viewer of images obtained for some different sources: X-ray, NMR and DICOM-compatible imaging devices that runs on free operating systems. Its aim is a easy to use DICOM viewer with instant rendering of images, no matter the size and the zoom of the DICOM image. It covers the "let's see the the X-ray image" need of the medical professional.
For DICOM Medical Image Samples see also http://www.barre.nom.fr/medical/samples/
Ktechlab Simulator GPL Education, Scientists KTechlab provides a powerful environment for electronic circuits and microcontrollers. This includes simulation of a variety of components (logic, integrated, linear, nonlinear and reactive), simulation and debugging of PIC microcontrollers via gpsim

Lots of dependencies

KBibTeX BibTeX Management GPL Education, Scientists KBibTeX is a BibTeX editor for KDE to edit bibliographies used with LaTeX. Features include comfortable input masks, starting web queries (e. g. Google or PubMed) and exporting to PDF, PostScript, RTF and XML/HTML. As KBibTeX is using KDE's KParts technology, KBibTeX can be embedded into Kile or Konqueror.

L

Package Description License wanted by remark
LAPACK95 Linear Algabra Package BSD-like Scientists
Engineers
Fortran 95 interface to LAPACK

M

Package Description License wanted by remark
MAXIMA Symbolic algebra system GPL Scientists
Engineers
Maxima is a full symbolic computation program. It is full featured doing symbolic manipulation of polynomials, matrices, rational functions, integration, Todd-coxeter, graphing, bigfloats.

Package available at http://software.opensuse.org/download/science/

N

Package Description License wanted by remark
NAMDHighly scalable high performance molecular dynamics package.UIUC licensebiochemistsFree for academic use and internal business use only. Check out VMD from the same group
NumPy Python numerics package OSI-Approved Open Source Scientists
Engineers
Adds a fast array feature and many numerics routines (like FFTs, linear algebra) to Python. Needed for SciPy.

Packages available at http://software.opensuse.org/download/science/

O

Package Description License wanted by remark
Octave GNU Octave is a high-level language, primarily intended for numerical computations GPL Scientists, Engineers GNU Octave is a high-level language, primarily intended for numerical computations. It provides a convenient command line interface for solving linear and nonlinear problems numerically, and for performing other numerical experiments using a language that is mostly compatible with Matlab.

Packages available at http://software.opensuse.org/download/science/

Octave-forge Function files for Octave GPL Octave-forge is a library of functions that provides MATLAB compatibility to Octave.
octaviz 3D Visualization System for Octave GPL Scientists, Engineers Octaviz is a visualization system for Octave. It is a wrapper that makes all VTK classes accessible from within Octave using the same object-oriented syntax as in C++ or Python. Octaviz also provides high-level functions for 2D and 3D visualization. Using those functions, most common visualization tasks (3D surface plots, contour plots, meshes etc) can be accomplished without any knowledge about VTK.
OpenCascade OpenCASACADE is a CAD-System for 3D modeling & numerical simulation LGPL-like Engineers
Scientists
Students
Open CASCADE is a powerful CAD/CAM/CAE kernel and development platform for 3D modeling applications. It consists of reusable C++ object libraries and a set of development tools that are available in Open Source.
OpenCV Open Computer Vision GPL Roboticists and
Vision developers
Computer vision development library.
OpenDX 3D scientific visualization software GPL Scientists
Students
OpenDX is a package for visualization of 3D data. It features surface plots, volume plots, 3D-plots of functions and visualization of time-dependent (4D) data. It is programmable via a visual interface by connecting various functional modules for visualizing and interactively or non-interactively manipulating and browsing data.
In Factory it exists as package dx*. Also available at http://software.opensuse.org/download/home:/lmich/
OpenFOAM The open source CFD Toolbox GPL Scientists
Students
The OpenFOAM (Open Field Operation and Manipulation) CFD Toolbox can simulate anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics, electromagnetics and the pricing of financial options. Based on finite diff. methods. Expandable libraries. Case management and data vis. included.
Open MPI Open Source High Performance Computing BSD Scientists
Computer Scientists
Chemists
Open MPI is a project combining technologies and resources from several other projects (FT-MPI, LA-MPI, LAM/MPI, and PACX-MPI) in order to build the best MPI library available. A completely new MPI-2 compliant implementation, Open MPI offers advantages for system and software vendors, application developers and computer science researchers. Test packages available at http://repos.opensuse.org/home:/ferichter/
Orsa - xorsa Open Source Celestial Mechanics computations GPL Scientists
Astrophysicists
ORSA is an interactive tool for scientific grade Celestial Mechanics computations. Asteroids, comets, artificial satellites, Solar and extra-Solar planetary systems can be accurately reproduced, simulated, and analyzed.

P

Package Description License wanted by remark
Parallel Visualization Application Multi-platform application designed to visualize data sets of size varying from small to very large. Kitware open-source license Scientists and Data Analysts The goals of the ParaView project include the following:
- Develop an open-source, multi-platform visualization application.
- Support distributed computation models to process large data sets.
- Create an open, flexible, and intuitive user interface.
- Develop an extensible architecture based on open standards. 

ParaView runs on distributed and shared memory parallel as well as single processor systems and has been successfully tested on Windows, Mac OS X, Linux and various Unix workstations, clusters and supercomputers. Under the hood, ParaView uses the Visualization Toolkit as the data processing and rendering engine and has a user interface written using Qt.

Process Visualization Browser HMI(Human Machine Interface) & SCADA(Supervisory Control and Data Acquisition) Software GPL Process & Electrical Engineers SCADA (supervisory control and data acquisition) is a category of software application program for process control, the gathering of data in real time from remote locations in order to control equipment and conditions. SCADA is used in power plants as well as in oil and gas refining, telecommunications, transportation, and water and waste control. The hardware gathers and feeds data into a computer that has SCADA software installed. The computer then processes this data and presents it in a timely manner ( HMI ). SCADA also records and logs all events into a file stored on a hard disk or sends them to a printer. SCADA warns when conditions become hazardous by sounding alarms.

Q

Package Description License wanted by remark
QtiPlot Data analysis and scientific plotting GPL Scientists A Packman package exists
QuantumGIS GIS Gui for Grass and other formats GPL Scientists, Land Managment, Engineers

Package available at http://software.opensuse.org/Application:/Geo/

Qucs Qucs provides a GUI based on Qt for setting up electronical circuits and a simulator, which is able to simulate the small- and large signal and noise behaviour of microwave circuits. Pure digital simulations can be performed via VHDL. The results can be shown on a presentation page in different formats (rectangular, polar, smith, tabular, 3D rectangular etc.). GPL Scientists, Electronic , Engineers Depends on Qt

Package available at http://software.opensuse.org/download/science/)

R

Package Description License wanted by remark
ROOT An Object-Oriented Data Analysis Framework GPL Scientists ROOT is a data analysis framework used mainly by the physics community but it has also been applied to the business sector.
RLaBplus An open-source scripting environment for scientific computations GPL Scientists/Researchers Rlab is a very high level language intended to provide fast prototyping and program development, as well as easy data-visualization, and processing.RLaBplus is another step in an evolution of the original Rlab.

S

Package Description License wanted by remark
SALOME Platform for Pre and Post-Processing LGPLEngineers
Scientists
Generic platform for Pre and Post-Processing for numerical simulation.
ScaLAPACK Parallized version of LAPACK GPL Scientists For those who have a multicore computer and want to distribute eigenproblems.
SciGraphica Data Analysis GPL Scientists
Engineers
SciGraphica is a scientific application for data analysis and technical graphics. It pretends to be a clone of the popular commercial (and expensive) application "Microcal Origin". It fully supplies plotting features for 2D, 3D and polar charts. The aim is to obtain a fully-featured, cross-plattform, user-friendly, self-growing scientific application.
SAGE Symbolic Calculation GPL Scientists SAGE is an Open Source Mathematics Software which aims to be a viable free open source alternative to Magma, Maple, Mathematica, and Matlab
SciPy Python routines for mathematics, science, and engineering Open-Source Engineers and Scientists Gives Python capabilites and functions similar to Matlab.

Packages available at http://software.opensuse.org/download/science/

SPARSKIT Sparse matrix calculation LGPL Scientists
Engineers
Sparskit can be regarded as augmentation to Lapack, which has only a limited support of sparse matrixes.

T

Package Description License wanted by remark
TKGate Digital circuit simulator GPL Education TkGate is a event driven digital circuit simulator with a tcl/tk-based graphical editor.

V

Package Description License wanted by remark
VTK Visulation toolkit BSD-like Scientists The Visualization ToolKit (VTK) is an open source, freely available software system for 3D computer graphics, image processing, and visualization used by thousands of researchers and developers around the world. VTK consists of a C++ class library, and several interpreted interface layers including Tcl/Tk, Java, and Python.

Preliminary openSUSE 11.0 builds based on Fedora's patches available at http://go.warwick.ac.uk/grok/vtk/

W

Package Description License wanted by remark
wxMAXIMA GUI for MAXIMA GPL Scientists
Engineers
wxMaxima is a wxWidgets GUI for the computer algebra system MAXIMA.

Package available at http://software.opensuse.org/download/science/

X

Package Description License wanted by remark
XDrawChem 2D chemical drawing program GPL Scientists
Chemical Engineers
chemical drawing program.


Package Wishlists: Base - Development - Drivers - Education - Emulation - Eyecandy - Games - GNOME - KDE - Mobile Computing - Multimedia - Network - Productivity - Science - Various - Dropped Packages